NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,957.1 |
| Mean read quality |
8.6 |
| Median read length |
1,881.0 |
| Median read quality |
9.0 |
| Number of reads |
17,130.0 |
| Read length N50 |
4,986.0 |
| STDEV read length |
3,307.8 |
| Total bases |
50,654,301.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
17090 (99.8%) 50.6Mb |
| >Q7 |
16929 (98.8%) 50.5Mb |
| >Q10 |
4961 (29.0%) 11.5Mb |
| >Q12 |
1754 (10.2%) 3.4Mb |
| >Q15 |
229 (1.3%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.1 (16) |
| 2 |
31.9 (17) |
| 3 |
31.8 (16) |
| 4 |
31.3 (30) |
| 5 |
28.3 (18) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
41408 (8.6) |
| 2 |
37489 (9.2) |
| 3 |
37332 (9.4) |
| 4 |
33914 (8.8) |
| 5 |
33466 (9.4) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,957.6 |
| Mean read quality |
8.6 |
| Median read length |
1,881.0 |
| Median read quality |
9.0 |
| Number of reads |
17,127.0 |
| Read length N50 |
4,986.0 |
| STDEV read length |
3,307.8 |
| Total bases |
50,654,252.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
17087 (99.8%) 50.6Mb |
| >Q7 |
16926 (98.8%) 50.5Mb |
| >Q10 |
4958 (28.9%) 11.5Mb |
| >Q12 |
1751 (10.2%) 3.4Mb |
| >Q15 |
226 (1.3%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.3 (30) |
| 2 |
28.3 (18) |
| 3 |
28.1 (17) |
| 4 |
28.0 (16) |
| 5 |
28.0 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
41408 (8.6) |
| 2 |
37489 (9.2) |
| 3 |
37332 (9.4) |
| 4 |
33914 (8.8) |
| 5 |
33466 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot