NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,952.1 |
| Mean read quality |
8.5 |
| Median read length |
1,825.0 |
| Median read quality |
8.9 |
| Number of reads |
235,705.0 |
| Read length N50 |
4,976.0 |
| STDEV read length |
3,334.0 |
| Total bases |
695,821,719.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
235590 (100.0%) 695.8Mb |
| >Q7 |
235242 (99.8%) 695.6Mb |
| >Q10 |
59216 (25.1%) 131.4Mb |
| >Q12 |
16668 (7.1%) 31.5Mb |
| >Q15 |
1175 (0.5%) 1.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
34.9 (16) |
| 2 |
32.5 (16) |
| 3 |
30.2 (16) |
| 4 |
30.1 (16) |
| 5 |
29.2 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
81330 (8.8) |
| 2 |
72889 (9.9) |
| 3 |
70270 (8.8) |
| 4 |
69312 (9.7) |
| 5 |
55141 (8.8) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,952.1 |
| Mean read quality |
8.5 |
| Median read length |
1,825.0 |
| Median read quality |
8.9 |
| Number of reads |
235,701.0 |
| Read length N50 |
4,976.0 |
| STDEV read length |
3,334.0 |
| Total bases |
695,821,655.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
235586 (100.0%) 695.8Mb |
| >Q7 |
235238 (99.8%) 695.6Mb |
| >Q10 |
59212 (25.1%) 131.4Mb |
| >Q12 |
16664 (7.1%) 31.5Mb |
| >Q15 |
1171 (0.5%) 1.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.2 (17) |
| 2 |
28.9 (16) |
| 3 |
28.8 (16) |
| 4 |
28.4 (16) |
| 5 |
28.3 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
81330 (8.8) |
| 2 |
72889 (9.9) |
| 3 |
70270 (8.8) |
| 4 |
69312 (9.7) |
| 5 |
55141 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot