NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,871.8 |
| Mean read quality |
8.5 |
| Median read length |
1,720.0 |
| Median read quality |
8.9 |
| Number of reads |
127,555.0 |
| Read length N50 |
4,988.0 |
| STDEV read length |
3,379.4 |
| Total bases |
366,313,482.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
127411 (99.9%) 366.3Mb |
| >Q7 |
127030 (99.6%) 366.2Mb |
| >Q10 |
32639 (25.6%) 69.7Mb |
| >Q12 |
10214 (8.0%) 18.5Mb |
| >Q15 |
870 (0.7%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.9 (16) |
| 2 |
32.5 (16) |
| 3 |
30.7 (16) |
| 4 |
30.3 (16) |
| 5 |
29.9 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
91534 (9.6) |
| 2 |
59801 (8.6) |
| 3 |
57295 (9.8) |
| 4 |
53345 (8.7) |
| 5 |
53014 (9.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,871.9 |
| Mean read quality |
8.5 |
| Median read length |
1,720.0 |
| Median read quality |
8.9 |
| Number of reads |
127,551.0 |
| Read length N50 |
4,988.0 |
| STDEV read length |
3,379.4 |
| Total bases |
366,313,418.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
127407 (99.9%) 366.3Mb |
| >Q7 |
127026 (99.6%) 366.2Mb |
| >Q10 |
32635 (25.6%) 69.7Mb |
| >Q12 |
10210 (8.0%) 18.5Mb |
| >Q15 |
866 (0.7%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.9 (16) |
| 2 |
28.4 (17) |
| 3 |
27.9 (16) |
| 4 |
27.7 (20) |
| 5 |
27.6 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
91534 (9.6) |
| 2 |
59801 (8.6) |
| 3 |
57295 (9.8) |
| 4 |
53345 (8.7) |
| 5 |
53014 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot