NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,747.6 |
| Mean read quality |
8.7 |
| Median read length |
1,678.0 |
| Median read quality |
9.0 |
| Number of reads |
40,567.0 |
| Read length N50 |
4,718.0 |
| STDEV read length |
3,191.1 |
| Total bases |
111,460,676.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
40502 (99.8%) 111.5Mb |
| >Q7 |
40356 (99.5%) 111.4Mb |
| >Q10 |
11592 (28.6%) 24.4Mb |
| >Q12 |
3675 (9.1%) 6.5Mb |
| >Q15 |
378 (0.9%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
28.2 (16) |
| 2 |
26.9 (17) |
| 3 |
26.8 (17) |
| 4 |
25.4 (16) |
| 5 |
25.3 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
72933 (7.6) |
| 2 |
72230 (7.7) |
| 3 |
54996 (8.1) |
| 4 |
51727 (7.6) |
| 5 |
44558 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot