NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 11,008.1
Mean read quality 29.1
Median read length 10,434.0
Median read quality 37.5
Number of reads 969,452.0
Read length N50 11,284.0
STDEV read length 2,970.3
Total bases 10,671,849,459.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 969452 (100.0%) 10671.8Mb
>Q7 969452 (100.0%) 10671.8Mb
>Q10 969452 (100.0%) 10671.8Mb
>Q12 969452 (100.0%) 10671.8Mb
>Q15 969452 (100.0%) 10671.8Mb
Top 5 highest mean basecall quality scores and their read lengths
1 93.0 (7773)
2 93.0 (853)
3 93.0 (6672)
4 93.0 (97)
5 93.0 (2726)
Top 5 longest reads and their mean basecall quality score
1 39568 (24.2)
2 37552 (20.8)
3 37213 (21.6)
4 36751 (22.0)
5 36517 (22.4)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality kde plot