NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 10,581.8
Mean read quality 28.8
Median read length 10,130.0
Median read quality 36.9
Number of reads 2,018,030.0
Read length N50 10,788.0
STDEV read length 2,600.5
Total bases 21,354,378,652.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 2018030 (100.0%) 21354.4Mb
>Q7 2018030 (100.0%) 21354.4Mb
>Q10 2018030 (100.0%) 21354.4Mb
>Q12 2018030 (100.0%) 21354.4Mb
>Q15 2018030 (100.0%) 21354.4Mb
Top 5 highest mean basecall quality scores and their read lengths
1 93.0 (2089)
2 93.0 (4304)
3 93.0 (6678)
4 93.0 (3442)
5 93.0 (7728)
Top 5 longest reads and their mean basecall quality score
1 41365 (21.4)
2 40098 (26.5)
3 39889 (25.1)
4 39388 (21.5)
5 38570 (25.8)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality kde plot