NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,751.9 |
| Mean read quality |
8.1 |
| Median read length |
1,830.0 |
| Median read quality |
8.6 |
| Number of reads |
471.0 |
| Read length N50 |
4,511.0 |
| STDEV read length |
2,784.4 |
| Total bases |
1,296,167.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
471 (100.0%) 1.3Mb |
| >Q7 |
471 (100.0%) 1.3Mb |
| >Q10 |
30 (6.4%) 0.1Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.9 (794) |
| 2 |
11.3 (3646) |
| 3 |
11.2 (1054) |
| 4 |
10.7 (3726) |
| 5 |
10.6 (566) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
25102 (8.4) |
| 2 |
18796 (9.1) |
| 3 |
15387 (8.8) |
| 4 |
13300 (7.3) |
| 5 |
13028 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot