NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,052.0 |
| Mean read quality |
8.7 |
| Median read length |
826.0 |
| Median read quality |
9.3 |
| Number of reads |
517.0 |
| Read length N50 |
1,147.0 |
| STDEV read length |
684.3 |
| Total bases |
543,872.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
517 (100.0%) 0.5Mb |
| >Q7 |
516 (99.8%) 0.5Mb |
| >Q10 |
122 (23.6%) 0.1Mb |
| >Q12 |
1 (0.2%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.4 (524) |
| 2 |
11.9 (693) |
| 3 |
11.8 (1349) |
| 4 |
11.6 (671) |
| 5 |
11.5 (689) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6132 (9.3) |
| 2 |
4866 (10.5) |
| 3 |
4226 (9.4) |
| 4 |
3999 (8.3) |
| 5 |
3902 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot