NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
969.2 |
| Mean read quality |
9.3 |
| Median read length |
777.0 |
| Median read quality |
9.9 |
| Number of reads |
13.0 |
| Read length N50 |
920.0 |
| STDEV read length |
596.9 |
| Total bases |
12,600.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
13 (100.0%) 0.0Mb |
| >Q7 |
13 (100.0%) 0.0Mb |
| >Q10 |
6 (46.2%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.0 (777) |
| 2 |
10.7 (920) |
| 3 |
10.6 (781) |
| 4 |
10.5 (1100) |
| 5 |
10.4 (2377) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2377 (10.4) |
| 2 |
2256 (10.2) |
| 3 |
1100 (10.5) |
| 4 |
920 (10.7) |
| 5 |
805 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot