NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,568.4 |
| Mean read quality |
8.9 |
| Median read length |
959.0 |
| Median read quality |
9.7 |
| Number of reads |
72.0 |
| Read length N50 |
2,244.0 |
| STDEV read length |
1,486.8 |
| Total bases |
112,923.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
72 (100.0%) 0.1Mb |
| >Q7 |
72 (100.0%) 0.1Mb |
| >Q10 |
29 (40.3%) 0.0Mb |
| >Q12 |
2 (2.8%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.4 (6009) |
| 2 |
12.1 (575) |
| 3 |
11.7 (560) |
| 4 |
11.6 (799) |
| 5 |
11.5 (6494) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7448 (8.6) |
| 2 |
6494 (11.5) |
| 3 |
6009 (12.4) |
| 4 |
5212 (10.3) |
| 5 |
5131 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot