NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,196.8 |
| Mean read quality |
9.5 |
| Median read length |
1,603.0 |
| Median read quality |
10.1 |
| Number of reads |
599.0 |
| Read length N50 |
2,834.0 |
| STDEV read length |
2,058.0 |
| Total bases |
1,315,892.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
599 (100.0%) 1.3Mb |
| >Q7 |
599 (100.0%) 1.3Mb |
| >Q10 |
335 (55.9%) 0.7Mb |
| >Q12 |
9 (1.5%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.5 (693) |
| 2 |
12.5 (873) |
| 3 |
12.3 (704) |
| 4 |
12.3 (853) |
| 5 |
12.2 (944) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27800 (8.0) |
| 2 |
16163 (8.7) |
| 3 |
10983 (10.7) |
| 4 |
10871 (10.6) |
| 5 |
10688 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot