NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,981.7 |
| Mean read quality |
8.7 |
| Median read length |
908.0 |
| Median read quality |
9.4 |
| Number of reads |
281.0 |
| Read length N50 |
3,983.0 |
| STDEV read length |
3,200.6 |
| Total bases |
556,861.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
281 (100.0%) 0.6Mb |
| >Q7 |
281 (100.0%) 0.6Mb |
| >Q10 |
80 (28.5%) 0.1Mb |
| >Q12 |
2 (0.7%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.6 (708) |
| 2 |
12.1 (540) |
| 3 |
11.7 (621) |
| 4 |
11.5 (815) |
| 5 |
11.4 (601) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
28553 (8.9) |
| 2 |
20810 (10.5) |
| 3 |
19515 (9.5) |
| 4 |
16999 (8.9) |
| 5 |
14396 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot