NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,074.6 |
| Mean read quality |
9.0 |
| Median read length |
2,709.0 |
| Median read quality |
9.7 |
| Number of reads |
4,327.0 |
| Read length N50 |
10,058.0 |
| STDEV read length |
6,044.4 |
| Total bases |
21,957,604.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4327 (100.0%) 22.0Mb |
| >Q7 |
4322 (99.9%) 22.0Mb |
| >Q10 |
1519 (35.1%) 7.9Mb |
| >Q12 |
18 (0.4%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (551) |
| 2 |
12.8 (943) |
| 3 |
12.7 (691) |
| 4 |
12.6 (1520) |
| 5 |
12.5 (1852) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
69578 (9.1) |
| 2 |
55116 (11.2) |
| 3 |
47435 (9.6) |
| 4 |
45766 (9.9) |
| 5 |
41807 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot