NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,835.4 |
| Mean read quality |
8.4 |
| Median read length |
1,869.0 |
| Median read quality |
9.0 |
| Number of reads |
1,293.0 |
| Read length N50 |
7,598.0 |
| STDEV read length |
5,023.0 |
| Total bases |
4,959,202.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1293 (100.0%) 5.0Mb |
| >Q7 |
1293 (100.0%) 5.0Mb |
| >Q10 |
255 (19.7%) 0.9Mb |
| >Q12 |
1 (0.1%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.3 (577) |
| 2 |
11.9 (1204) |
| 3 |
11.8 (1498) |
| 4 |
11.8 (3068) |
| 5 |
11.7 (6134) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
40443 (9.7) |
| 2 |
38891 (8.3) |
| 3 |
35238 (9.4) |
| 4 |
32930 (7.4) |
| 5 |
31679 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot