NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
858.8 |
| Mean read quality |
8.1 |
| Median read length |
673.0 |
| Median read quality |
8.6 |
| Number of reads |
121.0 |
| Read length N50 |
817.0 |
| STDEV read length |
630.9 |
| Total bases |
103,919.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
121 (100.0%) 0.1Mb |
| >Q7 |
121 (100.0%) 0.1Mb |
| >Q10 |
8 (6.6%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.4 (1005) |
| 2 |
10.8 (927) |
| 3 |
10.8 (598) |
| 4 |
10.6 (855) |
| 5 |
10.5 (1553) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6175 (7.8) |
| 2 |
3138 (7.4) |
| 3 |
2474 (8.3) |
| 4 |
2117 (8.0) |
| 5 |
1629 (7.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot