NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
939.1 |
| Mean read quality |
9.8 |
| Median read length |
746.0 |
| Median read quality |
10.6 |
| Number of reads |
2,722.0 |
| Read length N50 |
988.0 |
| STDEV read length |
568.7 |
| Total bases |
2,556,137.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2722 (100.0%) 2.6Mb |
| >Q7 |
2721 (100.0%) 2.6Mb |
| >Q10 |
1838 (67.5%) 1.7Mb |
| >Q12 |
231 (8.5%) 0.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.7 (606) |
| 2 |
14.7 (689) |
| 3 |
14.4 (514) |
| 4 |
14.3 (530) |
| 5 |
14.0 (852) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7275 (11.2) |
| 2 |
6529 (11.0) |
| 3 |
5659 (9.6) |
| 4 |
5430 (11.3) |
| 5 |
5260 (11.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot