NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,516.5 |
| Mean read quality |
9.9 |
| Median read length |
947.5 |
| Median read quality |
10.6 |
| Number of reads |
3,660.0 |
| Read length N50 |
2,072.0 |
| STDEV read length |
1,570.9 |
| Total bases |
5,550,248.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3660 (100.0%) 5.6Mb |
| >Q7 |
3659 (100.0%) 5.5Mb |
| >Q10 |
2582 (70.5%) 3.9Mb |
| >Q12 |
361 (9.9%) 0.4Mb |
| >Q15 |
4 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.3 (610) |
| 2 |
15.8 (530) |
| 3 |
15.6 (776) |
| 4 |
15.3 (562) |
| 5 |
14.6 (549) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
24773 (10.5) |
| 2 |
19789 (10.3) |
| 3 |
19138 (8.4) |
| 4 |
12922 (11.5) |
| 5 |
12679 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot