NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
921.0 |
| Mean read quality |
9.1 |
| Median read length |
694.0 |
| Median read quality |
9.8 |
| Number of reads |
261.0 |
| Read length N50 |
877.0 |
| STDEV read length |
880.1 |
| Total bases |
240,383.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
261 (100.0%) 0.2Mb |
| >Q7 |
261 (100.0%) 0.2Mb |
| >Q10 |
110 (42.1%) 0.1Mb |
| >Q12 |
4 (1.5%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.8 (580) |
| 2 |
12.3 (800) |
| 3 |
12.1 (556) |
| 4 |
12.1 (1080) |
| 5 |
11.9 (503) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8195 (10.3) |
| 2 |
8113 (10.8) |
| 3 |
5193 (9.8) |
| 4 |
4636 (9.5) |
| 5 |
4255 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot