NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,800.0 |
| Mean read quality |
9.8 |
| Median read length |
1,384.0 |
| Median read quality |
10.6 |
| Number of reads |
60,806.0 |
| Read length N50 |
5,357.0 |
| STDEV read length |
3,470.4 |
| Total bases |
170,256,807.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
60806 (100.0%) 170.3Mb |
| >Q7 |
60779 (100.0%) 170.2Mb |
| >Q10 |
41996 (69.1%) 122.7Mb |
| >Q12 |
4795 (7.9%) 10.9Mb |
| >Q15 |
2 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.1 (1075) |
| 2 |
15.1 (545) |
| 3 |
14.9 (539) |
| 4 |
14.8 (798) |
| 5 |
14.7 (534) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
43154 (8.9) |
| 2 |
39793 (11.0) |
| 3 |
38647 (10.2) |
| 4 |
38512 (11.3) |
| 5 |
38179 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot