NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
863.0 |
| Mean read quality |
8.8 |
| Median read length |
715.0 |
| Median read quality |
9.4 |
| Number of reads |
15,822.0 |
| Read length N50 |
854.0 |
| STDEV read length |
527.9 |
| Total bases |
13,653,968.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
15822 (100.0%) 13.7Mb |
| >Q7 |
15806 (99.9%) 13.6Mb |
| >Q10 |
4276 (27.0%) 3.7Mb |
| >Q12 |
47 (0.3%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (534) |
| 2 |
13.0 (883) |
| 3 |
12.8 (547) |
| 4 |
12.8 (689) |
| 5 |
12.7 (531) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15831 (9.2) |
| 2 |
11647 (10.0) |
| 3 |
11334 (10.8) |
| 4 |
10897 (10.4) |
| 5 |
9899 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot