NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
723.2 |
| Mean read quality |
8.9 |
| Median read length |
597.0 |
| Median read quality |
9.4 |
| Number of reads |
109.0 |
| Read length N50 |
719.0 |
| STDEV read length |
266.3 |
| Total bases |
78,832.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
109 (100.0%) 0.1Mb |
| >Q7 |
109 (100.0%) 0.1Mb |
| >Q10 |
33 (30.3%) 0.0Mb |
| >Q12 |
2 (1.8%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.2 (771) |
| 2 |
12.1 (520) |
| 3 |
11.7 (1066) |
| 4 |
11.7 (537) |
| 5 |
11.2 (553) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2131 (7.6) |
| 2 |
1608 (9.1) |
| 3 |
1508 (9.5) |
| 4 |
1339 (10.7) |
| 5 |
1304 (9.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot