NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,421.0 |
| Mean read quality |
9.0 |
| Median read length |
1,328.0 |
| Median read quality |
9.7 |
| Number of reads |
1,652.0 |
| Read length N50 |
4,416.0 |
| STDEV read length |
2,894.6 |
| Total bases |
3,999,531.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1652 (100.0%) 4.0Mb |
| >Q7 |
1650 (99.9%) 4.0Mb |
| >Q10 |
615 (37.2%) 1.4Mb |
| >Q12 |
25 (1.5%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.7 (742) |
| 2 |
13.1 (954) |
| 3 |
13.1 (688) |
| 4 |
12.8 (2488) |
| 5 |
12.7 (557) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
32724 (11.2) |
| 2 |
23873 (10.0) |
| 3 |
22927 (10.1) |
| 4 |
20801 (9.8) |
| 5 |
19388 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot