NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,727.2 |
| Mean read quality |
9.3 |
| Median read length |
1,085.0 |
| Median read quality |
10.0 |
| Number of reads |
213.0 |
| Read length N50 |
2,406.0 |
| STDEV read length |
2,048.7 |
| Total bases |
367,904.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
213 (100.0%) 0.4Mb |
| >Q7 |
213 (100.0%) 0.4Mb |
| >Q10 |
107 (50.2%) 0.2Mb |
| >Q12 |
6 (2.8%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.6 (550) |
| 2 |
12.8 (635) |
| 3 |
12.7 (961) |
| 4 |
12.2 (860) |
| 5 |
12.1 (717) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18623 (10.3) |
| 2 |
14226 (9.5) |
| 3 |
11962 (10.8) |
| 4 |
7180 (9.0) |
| 5 |
6718 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot