NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,002.1 |
| Mean read quality |
8.9 |
| Median read length |
1,190.0 |
| Median read quality |
9.6 |
| Number of reads |
17,800.0 |
| Read length N50 |
3,043.0 |
| STDEV read length |
2,261.9 |
| Total bases |
35,637,945.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
17800 (100.0%) 35.6Mb |
| >Q7 |
17791 (99.9%) 35.6Mb |
| >Q10 |
6286 (35.3%) 12.6Mb |
| >Q12 |
204 (1.1%) 0.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.5 (926) |
| 2 |
14.0 (564) |
| 3 |
13.7 (844) |
| 4 |
13.6 (824) |
| 5 |
13.5 (570) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
28434 (8.9) |
| 2 |
26705 (11.3) |
| 3 |
25380 (9.3) |
| 4 |
24918 (10.9) |
| 5 |
24650 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot