NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,755.8 |
| Mean read quality |
9.5 |
| Median read length |
1,268.0 |
| Median read quality |
10.2 |
| Number of reads |
23,810.0 |
| Read length N50 |
2,298.0 |
| STDEV read length |
1,482.4 |
| Total bases |
41,805,468.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
23810 (100.0%) 41.8Mb |
| >Q7 |
23802 (100.0%) 41.8Mb |
| >Q10 |
13666 (57.4%) 24.3Mb |
| >Q12 |
890 (3.7%) 1.3Mb |
| >Q15 |
1 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (903) |
| 2 |
14.7 (1179) |
| 3 |
14.6 (765) |
| 4 |
14.5 (933) |
| 5 |
14.2 (670) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17003 (11.0) |
| 2 |
16918 (10.0) |
| 3 |
16521 (9.3) |
| 4 |
16125 (10.1) |
| 5 |
16120 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot