NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,086.0 |
| Mean read quality |
9.0 |
| Median read length |
728.0 |
| Median read quality |
9.6 |
| Number of reads |
78.0 |
| Read length N50 |
1,260.0 |
| STDEV read length |
1,125.8 |
| Total bases |
84,705.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
78 (100.0%) 0.1Mb |
| >Q7 |
78 (100.0%) 0.1Mb |
| >Q10 |
27 (34.6%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.9 (510) |
| 2 |
11.8 (799) |
| 3 |
11.6 (3146) |
| 4 |
11.5 (532) |
| 5 |
11.3 (695) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9125 (9.0) |
| 2 |
4229 (10.0) |
| 3 |
3146 (11.6) |
| 4 |
2822 (9.8) |
| 5 |
2491 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot