NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,218.2 |
| Mean read quality |
8.7 |
| Median read length |
861.0 |
| Median read quality |
9.4 |
| Number of reads |
21,449.0 |
| Read length N50 |
1,375.0 |
| STDEV read length |
1,198.7 |
| Total bases |
26,130,137.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
21449 (100.0%) 26.1Mb |
| >Q7 |
21421 (99.9%) 26.1Mb |
| >Q10 |
5356 (25.0%) 6.3Mb |
| >Q12 |
49 (0.2%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (690) |
| 2 |
13.1 (537) |
| 3 |
12.9 (525) |
| 4 |
12.9 (556) |
| 5 |
12.7 (616) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
32788 (8.4) |
| 2 |
28595 (8.4) |
| 3 |
26490 (9.9) |
| 4 |
21751 (8.9) |
| 5 |
21203 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot