NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
842.6 |
| Mean read quality |
8.8 |
| Median read length |
758.0 |
| Median read quality |
9.6 |
| Number of reads |
49.0 |
| Read length N50 |
834.0 |
| STDEV read length |
339.0 |
| Total bases |
41,285.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
49 (100.0%) 0.0Mb |
| >Q7 |
49 (100.0%) 0.0Mb |
| >Q10 |
17 (34.7%) 0.0Mb |
| >Q12 |
2 (4.1%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.4 (759) |
| 2 |
12.1 (538) |
| 3 |
11.2 (503) |
| 4 |
10.6 (1445) |
| 5 |
10.6 (674) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2058 (8.4) |
| 2 |
1856 (8.9) |
| 3 |
1562 (8.7) |
| 4 |
1445 (10.6) |
| 5 |
1321 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot