NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,883.6 |
| Mean read quality |
9.9 |
| Median read length |
1,316.0 |
| Median read quality |
10.6 |
| Number of reads |
8,173.0 |
| Read length N50 |
5,981.0 |
| STDEV read length |
4,560.9 |
| Total bases |
23,567,795.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8173 (100.0%) 23.6Mb |
| >Q7 |
8172 (100.0%) 23.6Mb |
| >Q10 |
5948 (72.8%) 17.0Mb |
| >Q12 |
508 (6.2%) 0.7Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.1 (703) |
| 2 |
13.9 (510) |
| 3 |
13.9 (822) |
| 4 |
13.8 (557) |
| 5 |
13.7 (997) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
75669 (9.9) |
| 2 |
60254 (9.8) |
| 3 |
55755 (10.1) |
| 4 |
51528 (10.9) |
| 5 |
49546 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot