NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
910.5 |
| Mean read quality |
9.2 |
| Median read length |
661.0 |
| Median read quality |
10.0 |
| Number of reads |
443.0 |
| Read length N50 |
790.0 |
| STDEV read length |
2,272.6 |
| Total bases |
403,351.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
443 (100.0%) 0.4Mb |
| >Q7 |
441 (99.5%) 0.4Mb |
| >Q10 |
224 (50.6%) 0.2Mb |
| >Q12 |
9 (2.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (512) |
| 2 |
12.8 (592) |
| 3 |
12.6 (568) |
| 4 |
12.3 (753) |
| 5 |
12.3 (560) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
44705 (11.2) |
| 2 |
16839 (11.1) |
| 3 |
5509 (11.6) |
| 4 |
5003 (11.2) |
| 5 |
4503 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot