NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
666.1 |
| Mean read quality |
9.5 |
| Median read length |
647.0 |
| Median read quality |
10.1 |
| Number of reads |
26.0 |
| Read length N50 |
685.0 |
| STDEV read length |
138.0 |
| Total bases |
17,319.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
26 (100.0%) 0.0Mb |
| >Q7 |
26 (100.0%) 0.0Mb |
| >Q10 |
14 (53.8%) 0.0Mb |
| >Q12 |
1 (3.8%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.2 (529) |
| 2 |
11.5 (515) |
| 3 |
11.4 (651) |
| 4 |
11.2 (738) |
| 5 |
11.1 (501) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1003 (10.1) |
| 2 |
904 (9.6) |
| 3 |
864 (10.5) |
| 4 |
835 (10.7) |
| 5 |
825 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot