NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,251.6 |
| Mean read quality |
10.0 |
| Median read length |
4,568.0 |
| Median read quality |
10.8 |
| Number of reads |
2,111.0 |
| Read length N50 |
15,837.0 |
| STDEV read length |
9,984.8 |
| Total bases |
17,419,030.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2111 (100.0%) 17.4Mb |
| >Q7 |
2111 (100.0%) 17.4Mb |
| >Q10 |
1649 (78.1%) 13.8Mb |
| >Q12 |
82 (3.9%) 0.3Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.5 (636) |
| 2 |
13.3 (2018) |
| 3 |
13.3 (520) |
| 4 |
13.1 (832) |
| 5 |
13.0 (1716) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
96630 (10.5) |
| 2 |
73956 (11.3) |
| 3 |
72055 (10.2) |
| 4 |
71616 (10.0) |
| 5 |
68256 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot