NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,246.8 |
| Mean read quality |
8.2 |
| Median read length |
926.0 |
| Median read quality |
8.8 |
| Number of reads |
83.0 |
| Read length N50 |
1,390.0 |
| STDEV read length |
889.0 |
| Total bases |
103,484.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
83 (100.0%) 0.1Mb |
| >Q7 |
83 (100.0%) 0.1Mb |
| >Q10 |
9 (10.8%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.3 (887) |
| 2 |
11.2 (784) |
| 3 |
10.6 (540) |
| 4 |
10.6 (1229) |
| 5 |
10.6 (697) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6222 (9.6) |
| 2 |
3853 (8.3) |
| 3 |
3754 (7.8) |
| 4 |
3027 (9.5) |
| 5 |
2918 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot