NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,508.0 |
| Mean read quality |
8.9 |
| Median read length |
595.0 |
| Median read quality |
9.5 |
| Number of reads |
11.0 |
| Read length N50 |
9,414.0 |
| STDEV read length |
2,517.5 |
| Total bases |
16,588.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
11 (100.0%) 0.0Mb |
| >Q7 |
11 (100.0%) 0.0Mb |
| >Q10 |
2 (18.2%) 0.0Mb |
| >Q12 |
1 (9.1%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.0 (525) |
| 2 |
10.2 (738) |
| 3 |
9.9 (648) |
| 4 |
9.6 (1014) |
| 5 |
9.6 (9414) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9414 (9.6) |
| 2 |
1536 (8.5) |
| 3 |
1014 (9.6) |
| 4 |
738 (10.2) |
| 5 |
648 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot