NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,443.0 |
| Mean read quality |
8.1 |
| Median read length |
799.0 |
| Median read quality |
8.7 |
| Number of reads |
49.0 |
| Read length N50 |
1,710.0 |
| STDEV read length |
2,452.3 |
| Total bases |
70,708.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
49 (100.0%) 0.1Mb |
| >Q7 |
49 (100.0%) 0.1Mb |
| >Q10 |
3 (6.1%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
10.9 (590) |
| 2 |
10.0 (1384) |
| 3 |
10.0 (1264) |
| 4 |
9.8 (585) |
| 5 |
9.7 (687) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17256 (9.5) |
| 2 |
5400 (8.7) |
| 3 |
3663 (9.0) |
| 4 |
2831 (8.8) |
| 5 |
2386 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot