NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
858.9 |
| Mean read quality |
8.1 |
| Median read length |
746.0 |
| Median read quality |
8.6 |
| Number of reads |
130.0 |
| Read length N50 |
891.0 |
| STDEV read length |
373.4 |
| Total bases |
111,652.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
130 (100.0%) 0.1Mb |
| >Q7 |
129 (99.2%) 0.1Mb |
| >Q10 |
9 (6.9%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.3 (726) |
| 2 |
10.8 (569) |
| 3 |
10.7 (1209) |
| 4 |
10.7 (782) |
| 5 |
10.6 (530) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2334 (8.1) |
| 2 |
2183 (9.2) |
| 3 |
2132 (8.7) |
| 4 |
2011 (7.8) |
| 5 |
1915 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot