NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
891.5 |
| Mean read quality |
7.8 |
| Median read length |
592.0 |
| Median read quality |
8.2 |
| Number of reads |
12.0 |
| Read length N50 |
751.0 |
| STDEV read length |
524.8 |
| Total bases |
10,698.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
12 (100.0%) 0.0Mb |
| >Q7 |
12 (100.0%) 0.0Mb |
| >Q10 |
0 (0.0%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
9.5 (1575) |
| 2 |
9.0 (751) |
| 3 |
8.7 (524) |
| 4 |
8.6 (623) |
| 5 |
8.4 (559) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1935 (8.3) |
| 2 |
1834 (7.5) |
| 3 |
1575 (9.5) |
| 4 |
751 (9.0) |
| 5 |
748 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot