NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,754.2 |
| Mean read quality |
9.3 |
| Median read length |
745.0 |
| Median read quality |
10.0 |
| Number of reads |
280.0 |
| Read length N50 |
4,347.0 |
| STDEV read length |
4,524.0 |
| Total bases |
491,177.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
280 (100.0%) 0.5Mb |
| >Q7 |
280 (100.0%) 0.5Mb |
| >Q10 |
141 (50.4%) 0.2Mb |
| >Q12 |
7 (2.5%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.9 (687) |
| 2 |
12.7 (565) |
| 3 |
12.7 (588) |
| 4 |
12.6 (501) |
| 5 |
12.4 (645) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
51126 (7.5) |
| 2 |
30741 (9.7) |
| 3 |
29096 (10.9) |
| 4 |
28358 (9.6) |
| 5 |
19881 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot