NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,714.7 |
| Mean read quality |
9.2 |
| Median read length |
1,783.5 |
| Median read quality |
9.8 |
| Number of reads |
7,816.0 |
| Read length N50 |
4,146.0 |
| STDEV read length |
2,664.4 |
| Total bases |
21,218,020.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7816 (100.0%) 21.2Mb |
| >Q7 |
7814 (100.0%) 21.2Mb |
| >Q10 |
3268 (41.8%) 9.0Mb |
| >Q12 |
14 (0.2%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.6 (511) |
| 2 |
12.5 (546) |
| 3 |
12.5 (1075) |
| 4 |
12.3 (605) |
| 5 |
12.3 (714) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
30056 (10.8) |
| 2 |
25592 (11.2) |
| 3 |
24475 (9.5) |
| 4 |
22350 (10.1) |
| 5 |
22215 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot