NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,040.9 |
| Mean read quality |
8.6 |
| Median read length |
686.0 |
| Median read quality |
9.0 |
| Number of reads |
17.0 |
| Read length N50 |
1,095.0 |
| STDEV read length |
748.2 |
| Total bases |
17,695.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
17 (100.0%) 0.0Mb |
| >Q7 |
17 (100.0%) 0.0Mb |
| >Q10 |
3 (17.6%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
10.8 (547) |
| 2 |
10.1 (686) |
| 3 |
10.1 (649) |
| 4 |
9.8 (1095) |
| 5 |
9.7 (2667) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2834 (8.1) |
| 2 |
2667 (9.7) |
| 3 |
2306 (8.7) |
| 4 |
1095 (9.8) |
| 5 |
1001 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot