NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,901.1 |
| Mean read quality |
9.2 |
| Median read length |
2,236.0 |
| Median read quality |
9.9 |
| Number of reads |
226.0 |
| Read length N50 |
6,303.0 |
| STDEV read length |
5,185.2 |
| Total bases |
881,639.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
226 (100.0%) 0.9Mb |
| >Q7 |
226 (100.0%) 0.9Mb |
| >Q10 |
97 (42.9%) 0.4Mb |
| >Q12 |
2 (0.9%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.5 (647) |
| 2 |
12.4 (688) |
| 3 |
11.7 (538) |
| 4 |
11.4 (2730) |
| 5 |
11.3 (838) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
41256 (9.3) |
| 2 |
35638 (10.1) |
| 3 |
28151 (10.0) |
| 4 |
26822 (10.2) |
| 5 |
20141 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot