NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,482.5 |
| Mean read quality |
8.1 |
| Median read length |
1,013.0 |
| Median read quality |
8.7 |
| Number of reads |
1,275.0 |
| Read length N50 |
1,882.0 |
| STDEV read length |
1,585.3 |
| Total bases |
1,890,176.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1275 (100.0%) 1.9Mb |
| >Q7 |
1274 (99.9%) 1.9Mb |
| >Q10 |
89 (7.0%) 0.1Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.9 (623) |
| 2 |
11.5 (957) |
| 3 |
11.4 (548) |
| 4 |
11.1 (699) |
| 5 |
11.0 (909) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
25832 (9.1) |
| 2 |
18964 (9.0) |
| 3 |
17446 (9.4) |
| 4 |
12837 (8.4) |
| 5 |
12781 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot