NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,746.9 |
| Mean read quality |
9.1 |
| Median read length |
1,683.0 |
| Median read quality |
9.8 |
| Number of reads |
719.0 |
| Read length N50 |
4,455.0 |
| STDEV read length |
2,903.8 |
| Total bases |
1,974,986.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
719 (100.0%) 2.0Mb |
| >Q7 |
719 (100.0%) 2.0Mb |
| >Q10 |
285 (39.6%) 0.8Mb |
| >Q12 |
1 (0.1%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.6 (1058) |
| 2 |
11.9 (647) |
| 3 |
11.8 (1209) |
| 4 |
11.7 (583) |
| 5 |
11.6 (1128) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
23259 (9.5) |
| 2 |
20985 (9.9) |
| 3 |
20880 (9.6) |
| 4 |
17684 (9.1) |
| 5 |
17235 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot