NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,781.1 |
| Mean read quality |
9.3 |
| Median read length |
1,011.0 |
| Median read quality |
10.0 |
| Number of reads |
28.0 |
| Read length N50 |
2,819.0 |
| STDEV read length |
2,261.9 |
| Total bases |
49,871.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
28 (100.0%) 0.0Mb |
| >Q7 |
28 (100.0%) 0.0Mb |
| >Q10 |
13 (46.4%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.5 (2192) |
| 2 |
11.0 (555) |
| 3 |
11.0 (641) |
| 4 |
11.0 (770) |
| 5 |
10.8 (1734) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12330 (9.9) |
| 2 |
4944 (10.1) |
| 3 |
2892 (10.1) |
| 4 |
2842 (9.0) |
| 5 |
2819 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot