NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,259.8 |
| Mean read quality |
9.0 |
| Median read length |
1,006.5 |
| Median read quality |
9.7 |
| Number of reads |
50.0 |
| Read length N50 |
1,497.0 |
| STDEV read length |
833.8 |
| Total bases |
62,988.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
50 (100.0%) 0.1Mb |
| >Q7 |
50 (100.0%) 0.1Mb |
| >Q10 |
18 (36.0%) 0.0Mb |
| >Q12 |
1 (2.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.1 (1842) |
| 2 |
11.2 (1497) |
| 3 |
11.1 (534) |
| 4 |
11.0 (539) |
| 5 |
11.0 (2762) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4581 (9.9) |
| 2 |
3148 (9.6) |
| 3 |
2868 (9.9) |
| 4 |
2762 (11.0) |
| 5 |
2682 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot