NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
743.4 |
| Mean read quality |
8.9 |
| Median read length |
634.0 |
| Median read quality |
10.0 |
| Number of reads |
7.0 |
| Read length N50 |
939.0 |
| STDEV read length |
216.2 |
| Total bases |
5,204.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7 (100.0%) 0.0Mb |
| >Q7 |
7 (100.0%) 0.0Mb |
| >Q10 |
4 (57.1%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.5 (573) |
| 2 |
10.3 (1057) |
| 3 |
10.3 (963) |
| 4 |
10.0 (536) |
| 5 |
8.7 (502) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1057 (10.3) |
| 2 |
963 (10.3) |
| 3 |
939 (7.6) |
| 4 |
634 (8.1) |
| 5 |
573 (11.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot