NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
912.6 |
| Mean read quality |
8.5 |
| Median read length |
706.0 |
| Median read quality |
9.2 |
| Number of reads |
140.0 |
| Read length N50 |
961.0 |
| STDEV read length |
607.2 |
| Total bases |
127,767.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
140 (100.0%) 0.1Mb |
| >Q7 |
140 (100.0%) 0.1Mb |
| >Q10 |
27 (19.3%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.2 (1408) |
| 2 |
11.1 (500) |
| 3 |
11.1 (580) |
| 4 |
11.0 (572) |
| 5 |
11.0 (611) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4492 (8.8) |
| 2 |
4394 (9.3) |
| 3 |
3343 (9.6) |
| 4 |
2813 (8.8) |
| 5 |
2373 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot