NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,087.9 |
| Mean read quality |
8.4 |
| Median read length |
826.0 |
| Median read quality |
9.0 |
| Number of reads |
549.0 |
| Read length N50 |
1,218.0 |
| STDEV read length |
708.9 |
| Total bases |
597,269.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
549 (100.0%) 0.6Mb |
| >Q7 |
549 (100.0%) 0.6Mb |
| >Q10 |
55 (10.0%) 0.1Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.6 (523) |
| 2 |
11.6 (1141) |
| 3 |
11.3 (735) |
| 4 |
11.3 (2014) |
| 5 |
11.2 (1177) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4977 (9.5) |
| 2 |
4705 (9.4) |
| 3 |
4364 (10.9) |
| 4 |
4351 (8.8) |
| 5 |
3953 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot