NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,486.7 |
| Mean read quality |
9.3 |
| Median read length |
2,455.0 |
| Median read quality |
10.0 |
| Number of reads |
5,542.0 |
| Read length N50 |
8,724.0 |
| STDEV read length |
5,409.1 |
| Total bases |
24,865,201.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5542 (100.0%) 24.9Mb |
| >Q7 |
5541 (100.0%) 24.9Mb |
| >Q10 |
2758 (49.8%) 11.6Mb |
| >Q12 |
65 (1.2%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (514) |
| 2 |
13.3 (876) |
| 3 |
13.0 (507) |
| 4 |
12.9 (517) |
| 5 |
12.9 (821) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
59023 (10.7) |
| 2 |
53172 (9.6) |
| 3 |
42949 (9.8) |
| 4 |
41403 (9.8) |
| 5 |
41330 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot