NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,119.1 |
| Mean read quality |
8.3 |
| Median read length |
700.5 |
| Median read quality |
9.0 |
| Number of reads |
104.0 |
| Read length N50 |
1,053.0 |
| STDEV read length |
2,635.5 |
| Total bases |
116,383.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
104 (100.0%) 0.1Mb |
| >Q7 |
104 (100.0%) 0.1Mb |
| >Q10 |
12 (11.5%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.0 (711) |
| 2 |
10.8 (1302) |
| 3 |
10.8 (1342) |
| 4 |
10.6 (573) |
| 5 |
10.6 (1105) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27322 (9.7) |
| 2 |
3785 (9.3) |
| 3 |
3358 (10.3) |
| 4 |
2453 (8.0) |
| 5 |
2295 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot